SSR Markers

 

Generation and screening of microsatellite markers (SSRs) in coconut and oil palm.

 

CIRAD Partner 3

July 2002

Delivery D1.2:

Results of intra-species polymorphisms and cross-taxa transferability of these primers.

Overall Summary:

In progress - Future implementation to be made

Species

SSR Primers

Number of functional

Number of

Number of SSR loci with segregating alleles(s) on map progenies

Selected SSR loci

Developed

Screened

SSR Primers

functional

OIL PALM

COCONUT

for linkage mapping

for INCO

for INCO

on OIL PALM

on COCONUT

INCO/WP1

Reference map

Other maps

Reference map

Other maps

OIL PALM

COCONUT

Project

Project

DNA

DNA

Primers

LM2T X DA10D

PRD X EAT0707

maps (WP7)

maps (WP4)

COCONUT

300

309

100 (32%)

260 (84%)

251

31

49

101

157

49

174

OIL PALM

300

422

364 (86%)

142 (34%)

258

247

331

29

27

322

42

TOTAL

600

731

464

402

509

278

380

130

184

371

216

 

* For details on SSR contact Dr. Norbert Billote, CIRAD, norbert.billotte@cirad.fr

** See also SSR primers in OILPALM-ONLINE

INCO DEV PROJECT ICA-CT-2001-10066 "LINK2PALM"

Workpackage 1:

Generation and screening of microsatellite markers (SSRs) in coconut and oil palm.

Task 1:

Generation and screening of microsatellite markers (SSRs) in coconut and oil palm.

CIRAD Partner 3

July 2002

Delivery D1.1:

Sequence information on coconut and oil palm SSR primer pairs (300/species)

D1.1./Coconut:

Sequence information of 251 functional COCONUT SSR primer pairs developed for ICA4-CT-2001-10066

Future implementation - INCO primer sequences to be delivered through publications under the project.

COCONUTmicrosatellite

COCONUT SSR Primers

DNA sequence

Forward primer sequence

5'-3' Reverse primer sequence

Annealing

Reference

Functional

mCnCIR n°

Source

(mCnCIRxxxxF)

(mCnCIRxxxxR)

Temperature

allele size

INCO

bp

5'-3' sequence

bp

5'-3' sequence

(°C)

(bp)

Primers

mCnCIR0001

CIRAD

51

129

1

mCnCIR0002

CIRAD

51

253

1

mCnCIR0003

CIRAD

51

295

1

mCnCIR0004

CIRAD

51

210

1

mCnCIR0005

CIRAD

 

not functional

 

not functional

51

241

mCnCIR0006

CIRAD

51

323

1

mCnCIR0007

CIRAD

 

not functional

 

not functional

51

268

mCnCIR0008

CIRAD

51

164

1

mCnCIR0009

CIRAD

51

284

1

mCnCIR0010

CIRAD

51

265

1

mCnCIR0011

CIRAD

 

not functional

 

not functional

51

349

mCnCIR0012

CIRAD

51

276

1

mCnCIR0013

CIRAD

51

260

1

mCnCIR0014

CIRAD

 

not functional

 

not functional

51

255

mCnCIR0015

CIRAD

51

177

1

mCnCIR0016

CIRAD

51

132

1

mCnCIR0017

CIRAD

51

120

1

mCnCIR0018

CIRAD

51

202

1

mCnCIR0019

CIRAD

51

262

1

mCnCIR0020

CIRAD

51

123

1

mCnCIR0021

CIRAD

51

160

1

mCnCIR0022

CIRAD

51

162

1

mCnCIR0023

CIRAD

51

123

1

mCnCIR0024

CIRAD

51

189

1

mCnCIR0025

CIRAD

 

not functional

 

not functional

51

195

mCnCIR0026

CIRAD

 

not functional

 

not functional

51

231

mCnCIR0027

CIRAD

51

279

1

mCnCIR0028

CIRAD

51

203

1

mCnCIR0029

CIRAD

51

192

1

mCnCIR0030

CIRAD

51

269

1

mCnCIR0031

CIRAD

51

156

1

mCnCIR0032

CIRAD

51

197

1

mCnCIR0033

CIRAD

 

not functional

 

not functional

51

271

mCnCIR0034

CIRAD

51

157

1

mCnCIR0035

CIRAD

51

288

1

mCnCIR0036

CIRAD

51

346

1

mCnCIR0037

CIRAD

 

not functional

 

not functional

51

279

mCnCIR0038

CIRAD

 

 

 

 

51

80

1

mCnCIR0039

CIRAD

 

 

 

 

51

299

1

mCnCIR0040

CIRAD

51

290

1

mCnCIR0041

CIRAD

51

143

1

mCnCIR0042

CIRAD

51

237

1

mCnCIR0043

CIRAD

 

not functional

 

not functional

51

182

mCnCIR0044

CIRAD

 

not functional

 

not functional

51

143

mCnCIR0045

CIRAD

 

not functional

 

not functional

51

264

mCnCIR0046

CIRAD

51

153

1

mCnCIR0047

CIRAD

51

133

1

mCnCIR0048

CIRAD

51

236

1

mCnCIR0049

CIRAD

51

81

1

mCnCIR0050

CIRAD

51

215

1

mCnCIR0051

CIRAD

51

182

1

mCnCIR0052

CIRAD

51

261

1

mCnCIR0053

CIRAD

51

97

1

mCnCIR0054

CIRAD

51

205

1

mCnCIR0055

CIRAD

51

105

1

mCnCIR0056

CIRAD

51

218

1

mCnCIR0057

CIRAD

51

166

1

mCnCIR0058

CIRAD

51

140

1

mCnCIR0059

CIRAD

51

173

1

mCnCIR0060

CIRAD

 

not functional

 

not functional

51

107

mCnCIR0061

CIRAD

51

121

1

mCnCIR0062

CIRAD

51

319

1

mCnCIR0063

CIRAD

51

157

mCnCIR0064

CIRAD

 

not functional

 

not functional

51

252

1

mCnCIR0065

CIRAD

51

341

mCnCIR0066

CIRAD

51

350

1

mCnCIR0067

CIRAD

51

146

1

mCnCIR0068

CIRAD

 

not functional

 

not functional

51

319

mCnCIR0069

CIRAD

 

not functional

 

not functional

51

193

mCnCIR0070

CIRAD

51

242

1

mCnCIR0071

CIRAD

51

213

1

mCnCIR0072

CIRAD

51

104

1

mCnCIR0073

CIRAD

51

233

1

mCnCIR0074

CIRAD

51

166

1

mCnCIR0075

CIRAD

51

260

1

mCnCIR0076

CIRAD

51

186

1

mCnCIR0077

CIRAD

51

96

1

mCnCIR0078

CIRAD

51

184

mCnCIR0079

CIRAD

51

297

1

mCnCIR0080

CIRAD

 

not functional

 

not functional

51

347

mCnCIR0081

CIRAD

51

231

1

mCnCIR0082

CIRAD

51

131

1

mCnCIR0083

CIRAD

51

260

1

mCnCIR0084

CIRAD

51

102

1

mCnCIR0085

CIRAD

 

not functional

 

not functional

51

337

mCnCIR0086

CIRAD

51

163

1

mCnCIR0087

CIRAD

51

160

1

mCnCIR0088

CIRAD

51

151

1

mCnCIR0089

CIRAD

51

237

1

mCnCIR0090

CIRAD

51

84

1

mCnCIR0091

CIRAD

51

224

1

mCnCIR0092

CIRAD

51

110

1

mCnCIR0093

CIRAD

51

217

1

mCnCIR0094

CIRAD

51

298

1

mCnCIR0095

CIRAD

 

not functional

 

not functional

51

268

mCnCIR0096

CIRAD

51

258

1

mCnCIR0097

CIRAD

51

225

1

mCnCIR0098

CIRAD

51

158

1

mCnCIR0099

CIRAD

 

not functional

 

not functional

51

257

mCnCIR0100

CIRAD

51

119

1

mCnCIR0101

CIRAD

51

170

1

mCnCIR0102

CIRAD

51

293

1

mCnCIR0103

CIRAD

51

240

1

mCnCIR0104

CIRAD

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